OUR SOFTWARE

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RNApdbee
The RNApdbee is a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs


M. Antczak, T. Zok, M. Popenda, P. Lukasiak, R.W. Adamiak, J. Blazewicz, M. Szachniuk. RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs, Nucleic Acids Research 42(W1), 2014, W368-W372 (doi:10.1093/nar/gku330).

M. Antczak, M. Popenda, T. Zok, M. Zurkowski, R.W. Adamiak, M. Szachniuk. New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation, Bioinformatics 34(8), 2018, 1304-1312 (doi:10.1093/bioinformatics/btx783).

T. Zok, M. Antczak, M. Zurkowski, M. Popenda, J. Blazewicz, R.W. Adamiak, M. Szachniuk. RNApdbee 2.0: multifunctional tool for RNA structure annotation, Nucleic Acids Research 46(W1), 2018 (doi:10.1093/nar/gky314).