Eur_gold_medal_awers

Get familiar with our publications, read about our national and international projects, take a look at the awards collection!

ACHIEVEMENTS
ACHIEVEMENTS
We are proud of...
2020


  1. M. Magnus, M. Antczak, T. Zok, J. Wiedemann, P. Lukasiak, Y. Cao, J.M. Bujnicki, E. Westhof, M. Szachniuk,
    Z. Miao (2020) RNA-Puzzles toolkit: A computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools, Nucleic Acids Research 48(2), 576–588
    (doi: 10.1093/nar/gkz1108).
  2. T. Zok, M. Popenda, M. Szachniuk (2020) ElTetrado: a tool for identification and classification of tetrads and quadruplexes, BMC Bioinformatics 21, 40 (doi:10.1186/s12859-020-3385-1).
  3. M. Popenda, J. Miskiewicz, J. Sarzynska, T. Zok, M. Szachniuk (2020) Topology-based classification of tetrads and quadruplex structures, Bioinformatics 36(4), 1129-1134,
    online publication: 7 October 2019 (doi:10.1093/bioinformatics/btz738).
  4. T. Zok, J. Badura, S. Swat, K. Figurski, M. Popenda, M. Antczak (2020) New models and algorithms for RNA pseudoknot order assignment, International Journal of Applied Mathematics and Computer Science 30(2), 315-324 (doi:10.34768/amcs-2020-0024).

  5. Z. Miao, R.W. Adamiak, M. Antczak, M.J. Boniecki, J.M. Bujnicki, S-J. Chen, C.Y. Cheng, Y. Cheng, F-C. Chou, R. Das, N.V. Dokholyan, F. Ding, C. Geniesse, Y. Jiang, A. Joshi, A. Krokhotin, M. Magnus, O. Mailhot, F. Major, T.M. Mann, P. Piatkowski, R. Pluta, M. Popenda, J. Sarzynska, L. Sun, M. Szachniuk, S. Tian, J. Wang, A.M. Watkins, J. Wiedemann, X. Xu, J.D. Yesselman, D. Zhang, Z. Zhang, C. Zhao, P. Zhao, Y. Zhou, T. Zok, A. Zyla, A. Ren, R.T. Batey, B.L. Golden, L. Huang, D.M. Lilley, Y. Liu, D.J. Patel, E. Westhof (2020) RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers, RNA 26, 982-995 (doi:10.1261/rna.075341.120).

2019


  1. M. Antczak, M. Zablocki, T. Zok, A. Rybarczyk, J. Blazewicz, M. Szachniuk (2019) RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs, Bioinformatics 35(1), 152-155 (doi:10.1093/bioinformatics/bty609).

  2. M. Szachniuk (2019) RNApolis: computational platform for RNA structure analysis, Foundations of Computing and Decision Sciences 44(2), 241-257 (doi:10.2478/fcds-2019-0012).

  3. D. Formanowicz, J. Krawczyk, B. Perek, P. Formanowicz (2019) A Control-Theoretic Model of Atherosclerosis, International Journal of Molecular Sciences 20(3), 785 (doi:10.3390/ijms20030785).

  4. A. Kozak, T. Glowacki, P. Formanowicz (2019) A method for constructing artificial DNA libraries based on generalized de Bruijn sequences, Discrete Applied Mathematics, vol. 259, 127-144 (doi:10.1016/j.dam.2018.12.029)

  5. B. Gryszczynska, M. Budzyn, D. Formanowicz, P. Formanowicz, Z. Krasinski, N. Majewska, M. Iskra, M. Kasprzak (2019) Advanced Oxidation Protein Products and Carbonylated Proteins Levels in Endovascular and Open Repair of an Abdominal Aortic Aneurysm: The Effect of Pre-, Intra-, and Postoperative Treatment, BioMed Research International (18):1-9 (doi:10.1155/2019/7976043).

  6. K. Wiatr, P. Piasecki, L. Marczak, P. Wojciechowski, M. Kurkowiak, R. Ploski, M. Rydzanicz, L. Handschuh, J. Jungverdorben, O. Brustle, M. Figlerowicz, M. Figiel (2019) Altered Levels of Proteins and Phosphoproteins, in the Absence of Early Causative Transcriptional Changes, Shape the Molecular Pathogenesis in the Brain of Young Presymptomatic Ki91 SCA3/MJD Mouse, Molecular Neurobiology, vol. 56, 8168–8202 (doi:10.1007/s12035-019-01643-4).

  7. K. Switonska, W. Szlachcic, L. Handschuh, P. Wojciechowski, L. Marczak, M. Stelmaszczuk, M. Figlerowicz, M. Figiel (2019) Identification of altered developmental pathways in human juvenile HD iPSC with 71Q and 109Q using transcriptome profiling, Frontiers in Cellular Neuroscience 2018, 12:528 (doi:10.3389/fncel.2018.00528).

  8. M. Radom, M. Machnicka, J. Krwawicz, J. Bujnicki, P. Formanowicz (2019) Petri net–based model of the human DNA base excision repair pathway, PLOS ONE 14(9): e0217913 (doi:10.1371/journal.pone.0217913).

  9. D. Kogut, K., A. Poterala-Hejmo, J. Smieja, D. Formanowicz, P.Formanowicz (2019) Petri nets and ODE as complementary tools in analysis of signaling pathways, Proceedings of 11th International Conference on Bioinformatics and Computational Biology, vol. 60, 150-160 (doi:10.29007/542h).

  10. J. Carrascoza Mayén, J. Rydzewski, N. Szostak, J. Blazewicz, W. Nowak (2019) Prebiotic Soup Components Trapped in Montmorillonite Nanoclay Form New Molecules: Car-Parrinnello Ab Initio Simulations, Life 9(2), 46 (doi:10.3390/life9020046).

  11. M. Sajek, D. Janecki, M. Smialek, B. Ginter-Matuszewska, A. Spik, S. Oczkowski, E. Ilaslan, K. Kusz-Zamelczyk, M. Kotecki, J. Blazewicz, J. Jaruzelska (2019) PUM1 and PUM2 exhibit different modes of regulation for SIAH1 that involve cooperativity with NANOS paralogues, Cellular and Molecular Life Sciences, vol. 76, 147–161 (doi:10.1007/s00018-018-2926-5).

  12. S. Wasik, N. Szostak, M. Kudla, M. Wachowiak, K. Krawiec, J. Blazewicz (2019) Detecting Life Signatures with RNA Sequence Similarity Measures, Journal of Theoretical Biology, vol. 463, 110-120 (doi:10.1016/j.jtbi.2018.12.018).

  13. K. Gutowska, D. Formanowicz, P. Formanowicz (2019) Selected Aspects of Tobacco-Induced Prothrombotic State, Inflammation and Oxidative Stress: Modeled and Analyzed Using Petri Nets, Interdisciplinary Sciences Computational Life Sciences 11(6), 373-386 (doi:10.1007/s12539-018-0310-7).

  14. P. Jackowiak, A. Lis, M. Luczak, I. Stolarek, M. Figlerowicz (2019) Functional characterization of RNA fragments using high-throughput interactome screening, Journal of Proteomics 193, 173-183 (doi:10.1016/j.jprot.2018.10.007).

  15. M. Pokornowska, M. Milewski, K. Ciechanowska, A. Szczepańska, M. Wojnicka, Z. Radogostowicz, M. Figlerowicz, A. Kurzynska-Kokorniak (2019) The RNA-RNA base pairing potential of human Dicer and Ago2 proteins, Cellular and Molecular Life Sciences (doi:10.1007/s00018-019-03344-6).

  16. T. Machałowski, M. Wysokowski, M. Tsurkan, R. Galli, C. Schimpf, D. Rafaja, E. Brendler, C. Viehweger, S. Zoltowska-Aksamitowska, I. Petrenko, K. Czaczyk, M. Kraft, M. Bertau, N. Bechmann, K. Guan, S. Bornstein, A. Voronkina, A. Fursov, M. Bejger, K. Biniek-Antosiak, W. Rypniewski, M. Figlerowicz, O. Pokrovsky, T. Jesionowski, H. Ehrlich (2019) Spider Chitin: An Ultrafast Microwave-Assisted Method for Chitin Isolation from Caribena versicolor Spider Molt Cuticle, Molecules 24(20): 3736 (doi:10.3390/molecules24203736).

  17. T. Machalowski, M. Wysokowski, S. Zoltowska-Aksamitowska, N. Bechmann, B. Binnewerg, M. Schubert, K. Guan, S. Bornstein, K. Czaczyk, O. Pokrovsky, M. Kraft, M. Bertau, C. Schimpf, D. Rafaja, M. Tsurkan, R. Galli, H. Meissner, I. Petrenko, A. Fursov, A. Voronkina, M. Figlerowicz, Y. Joseph, T. Jesionowski, H. Ehrlich (2019) Spider Chitin. The biomimetic potential and applications of Caribena versicolor tubular chitin, Carbohydrate Polymers, vol. 226, 115301 (doi:10.1016/j.carbpol.2019.115301).

  18. L. Gutowski, K. Gutowska, M. Piorunska-Stolzmann, P. Formanowicz, D. Formanowicz (2019) Systems Approach to Study Associations between OxLDL and Abdominal Aortic Aneurysms, International Journal of Molecular Sciences 20(16): 3909 (doi:10.3390/ijms20163909).

  19. S. Wasik, M. Jaroszewski, M. Nowaczyk, J. Blazewicz (2019) VirDB: Crowdsourced Database for Evaluation of Dynamical Viral Infection Models, Current Bioinformatics 14(8) (doi:10.2174/1574893614666190308155904).

2018


  1. J. Miskiewicz, M. Szachniuk (2018). Discovering structural motifs in miRNA precursors from Viridiplantae kingdom, Molecules 23(6), 1367 (doi:10.3390/molecules23061367).

  2. T. Zok, M. Antczak, M. Zurkowski, M. Popenda, J. Blazewicz, R.W. Adamiak, M. Szachniuk (2018). RNApdbee 2.0: multifunctional tool for RNA structure annotation, Nucleic Acids Research 46(W1), W30-W35 (doi:10.1093/nar/gky314).

  3. M. Antczak, M. Popenda, T. Zok, M. Zurkowski, R.W. Adamiak, M. Szachniuk (2018). New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation, Bioinformatics 34(8), 1304-1312 (doi:10.1093/bioinformatics/btx783).

  4. D. Formanowicz, M. Radom, A. Rybarczyk, P. Formanowicz (2018). The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis – modeled and analyzed using a Petri net-based approach. Biosystems 165, 71-87. (doi:10.1016/j.biosystems.2018.01.002).

  5. J. Blazewicz, M. Kasprzak, M. Kierzynka, W. Frohmberg, A. Swiercz, P. Wojciechowski, P. Zurkowski (2018). Graph algorithms for DNA sequencing - origins, current models and the future, European Journal of Operational Research 264 (3), 799-812 (doi:10.1016/j.ejor.2016.06.043).

  6. M. Antczak, T. Zok, M. Osowiecki, M. Popenda, R.W. Adamiak, M. Szachniuk (2018). RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures, BMC Bioinformatics 19, 304 (doi:10.1186/s12859-018-2317-9).

2017


  1. P. Jackowiak, A. Hojka-Osińska, A. Philips, A. Zmienko, L. Budzko, P. Maillard, A. Budkowska, M. Figlerowicz (2017). Small RNA fragments derived from multiple RNA classes - the missing element of multi-omics characteristics of the hepatitis C virus cell culture model. BMC Genomics, vol. 18 (502), (doi: 10.1186/s12864-017-3891-3).

  2. A. Rybarczyk, P. Jackowiak, M. Figlerowicz, J. Blazewicz (2017). Computational prediction of nonenzymatic RNA degradation patterns, Acta Biochimica Polonica 63 (4), 745-751 (doi:10.18388/abp.2016_1331).

  3. K. Chmielewska, D. Formanowicz, P. Formanowicz (2017). The effect of cigarette smoking on endothelial damage and atherosclerosis development - modeled and analyzed using Petri nets. Archives of Control Sciences, 27(2), 211-228 (doi:10.1515/acsc-2017-0013).

  4. J. Wiedemann, T. Zok, M. Milostan, M. Szachniuk (2017). LCS-TA to identify similar fragments in RNA 3D structures, BMC Bioinformatics 18, 456 (doi:10.1186/s12859-017-1867-6).

  5. J. Miskiewicz, K. Tomczyk, A. Mickiewicz, J. Sarzynska, M. Szachniuk (2017). Bioinformatics study of structural patterns in plant microRNA precursors. BioMed Research International vol. 2017, article ID 6783010, 8 pages (doi:10.1155/2017/6783010).

  6. Z. Miao, R.W. Adamiak, M. Antczak, R.T. Batey, A.J. Becka, M. Biesiada, M.J. Boniecki, J.M. Bujnicki, S-J. Chen, C.Y. Cheng, F-C. Chou, A.R. Ferre-D'Amare, R. Das, W.K. Dawson, F. Ding, N.V. Dokholyan, S. Dunin-Horkawicz, C. Geniesse, K. Kappel, W. Kladwang, A. Krokhotin, G.E. Lach, F. Major, T.H. Mann, M. Magnus, K. Pachulska-Wieczorek, D.J. Patel, J.A. Piccirilli, M. Popenda, K.J. Purzycka, A. Ren, G.M. Rice, J. Jr. Santalucia, J. Sarzynska, M. Szachniuk, A. Tandon, J.J. Trausch, S. Tian, J. Wang, K.M. Weeks, B. Williams II, Y. Xiao, X. Xu, D. Zhang, T. Zok, E. Westhof (2017). RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme, RNA, (doi:10.1261/rna.060368.116).

  7. N. Szostak, J. Synak, M. Borowski, S. Wasik, J. Blazewicz (2017). Simulating the origins of life: The dual role of RNA replicases as an obstacle to evolution. PloS One 12 (7), (doi:10.1371/journal.pone.0180827).

  8. N. Szostak, S. Wasik, J. Blazewicz (2017). Understanding Life: A Bioinformatics Perspective. European Review 25 (2), 231-245 (doi:10.1017/S1062798716000570).

  9. A. Mickiewicz, J. Sarzyńska, M. Miłostan, A. Kurzyńska-Kokorniak, A. Rybarczyk, P. Łukasiak, T. Kuliński, M. Figlerowicz, J. Błażewicz (2017). Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA. Comput Biol Chem 66, 44–56 (doi:10.1016/j.compbiolchem.2016.11.003).

  10. A. Rybarczyk, A. Hertz, M. Kasprzak, J. Blazewicz (2017). Tabu Search for the RNA Partial Degradation Problem. International Journal of Applied Mathematics and Computer Science 27, 401–415 (doi:10.1515/amcs-2017-0028).

2016


  1. M. Milostan, P. Łukasiak (2016). DomGen-Graph based method for protein domain delineation, RAIRO-Oper. Res. 50 (2016) 363-374 (doi:10.1051/ro/2015040)

  2. J. Wiedemann, M. Milostan (2016). StructAnalyzer-a tool for sequence vs. structure similarity analysis, Acta Biochimica Polonica 63(4), 2016, 753-757

  3. M. Turkay, G. Felici, M. Szachniuk, P. Lukasiak (2016). Recent advances in operations research in computational biology, bioinformatics and medicine, RAIRO - Operations Research 50(2), 2016, 327-330 (doi:10.1051/ro/2015036).

  4. T. Prejzendanc, S. Wasik, J. Blazewicz (2016). Computer representations of bioinformatics models. Current Bioinformatics 11(5): 551-560. doi: 10.2174/1574893610666150928193510

  5. M. Antczak, M. Popenda, T. Zok, J. Sarzynska, T. Ratajczak, K. Tomczyk, R.W. Adamiak, M. Szachniuk (2016). New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure. Acta Biochimica Polonica doi: 10.18388/abp.2016_1329

  6. M. Chlopkowski, M. Antczak, M. Slusarczyk, A. Wdowinski, M. Zajaczkowski, M. Kasprzak (2016). High-order statistical compressor for long-term storage of DNA sequencing data. RAIRO Operations Research 50, pp. 351-361.

  7. N. Szostak, S. Wasik, J. Blazewicz (2016). Hypercycle. PLOS Comput Biol. 12:e1004853

  8. A. Mickiewicz, A. Rybarczyk, J. Sarzynska, M. Figlerowicz, J. Blazewicz (2016). AmiRNA Designer - new method of artificial miRNA design. Acta Biochimica Polonica 19.

  9. M. Marcinkowska-Swojak, L. Handschuh, P. Wojciechowski, M. Goralski, K. Tomaszewski, M. Kazmierczak, K. Lewandowski, M. Komarnicki, J. Blazewicz, M. Figlerowicz, P. Kozlowski (2016). A new MLPA-based method for the detection of acute myeloid leukemia-specific NPM1 mutations and simultaneous analysis of gene copy number alterations. Mutation Research. 786, pp.14-26

  10. M. Antczak, M. Kasprzak, P. Lukasiak, J. Blazewicz (2016). Structural alignment of protein descriptors – a combinatorial model. BMC Bioinformatics 17, pp. 383 doi:10.1186/s12859-016-1237-9

  11. A. Rybarczyk, P. Jackowiak, M. Figlerowicz, J. Blazewicz (2016). Computational prediction of non-enzymatic RNA degradation patterns. Acta biochimica Polonica

  12. P. Wojciechowski, W. Frohmberg, M. Kierzynka, P. Zurkowski, J. Blazewicz (2016). G-MAPSEQ – a new method for mapping reads to a reference genome. Foundations of Computing and Decision Sciences 41(2), pp. 123–142, doi: 10.1515/fcds-2016-0007
2015


  1. S. Wasik, F. Fratczak, J. Krzyskow, J. Wulnikowski (2015). Inferring Mathematical Equations Using Crowdsourcing. PLoS One 10(12):e0145557. doi: 10.1371/journal.pone.0145557. eCollection 2015.

  2. K.J. Purzycka, M. Popenda, M. Szachniuk, M. Antczak, P. Lukasiak, J. Blazewicz, R.W. Adamiak (2015). Automated 3D RNA structure prediction using the RNAComposer method for riboswitches, in Shi-Jie Chen, Donald H. Burke-Aguero (eds.) Methods in Enzymology: Computational Methods for Understanding Riboswitches 553, 2015, pp. 3-34.
  3. M. Biesiada, K.J. Purzycka, M. Szachniuk, J. Blazewicz, R.W. Adamiak (2015). Automated RNA 3D structure prediction with RNAComposer: guidance for molecular biologists, in Doug Turner, David Mathews (eds.) Methods in Molecular Biology: RNA Structure Determination, Springer, Humana Press, 2015.
  4. M. Szachniuk (2015). Assigning NMR Spectra of Irregular RNAs by Heuristic Algorithms. Bulletin of the Polish Academy of Sciences Technical Sciences 63(1), pp. 329-338.
  5. M. Szachniuk, M.C. De Cola, G. Felici, D. de Werra, J. Blazewicz (2015). Optimal pathway reconstruction on 3D NMR maps. Discrete Applied Mathematics 182, pp. 134-149.
  6. T. Zok, M. Antczak, M. Riedel, D. Nebel, T. Villmann, P. Lukasiak, J. Blazewicz, M. Szachniuk (2015). Building the library of RNA 3D nucleotide conformations using clustering approach, International Journal of Applied Mathematics and Computer Science, 2015, 25(3), pp. 689-700 (doi:10.1515/amcs-2015-0050.
  7. Z. Miao, R.W. Adamiak, M.-F. Blanchet, M. Boniecki, J.M. Bujnicki, S.-J.Chen, C. Cheng, G. Chojnowski, F.-C. Chou, P. Cordero, J.A. Cruz, A. Ferre-D'Amare, R. Das, F. Ding, N.V. Dokholyan, S. Dunin-Horkawicz, W. Kladwang, A. Krokhotin, G. Lach, M. Magnus, F. Major, T.H. Mann, B. Masquida, D. Matelska, M. Meyer, A. Peselis, M. Popenda, K.J. Purzycka, A. Serganov, J. Stasiewicz, M. Szachniuk, A. Tandon, S. Tian, J. Wang, Y. Xiao, X. Xu, J. Zhang, P. Zhao, T. Zok, E. Westhof (2015). RNA-Puzzles Round II: Assessment of RNA structure prediction programs applied to three large RNA structures, RNA 21(6), pp. 1-19.
  8. A. Rybarczyk, N. Szostak, M. Antczak, T. Zok, M. Popenda, R.W. Adamiak, J. Blazewicz, M. Szachniuk, New in silico approach to assessing RNA secondary structures with non-canonical base pairs, BMC Bioinformatics, 2015, 16(1), pp. 276 (doi:10.1186/s12859-015-0718-6).
  9. P. Lukasiak, M. Antczak, T. Ratajczak, M. Szachniuk, M. Popenda, R.W. Adamiak, J. Blazewicz, RNAssess - a web server for quality assessment of RNA 3D structures, Nucleic Acids Research, 2015, 43(W1), pp. W502-506 (doi:10.1093/nar/gkv557).
  10. M. Chlopkowski, M. Antczak, M. Slusarczyk, A. Wdowinski, M. Zajaczkowski, M. Kasprzak, High-order statistical compressor for long-term storage of DNA sequencing data, RAIRO - Operations Research, 2015, 10 (doi:10.1051/ro/2015039).
  11. M. Turkay, G. Felici, M. Szachniuk, P. Lukasiak, Recent advances in operations research in computational biology, bioinformatics and medicine, RAIRO - Operations Research 10, 2015, 1-3 (doi:10.1051/ro/2015036).

2014

  1. T. Zok, M. Popenda, M. Szachniuk (2013). MCQ4Structures to compute similarity of molecule structures. Central European Journal of Operations Research 22(3), pp. 457-474.
  2. J. Blazewicz, M. Szachniuk, N. Szostak, G-W. Weber (2014). Historic Venue for a Young Group of an Emerging Field. IFORS News 8(3), pp.9.
  3. N. Szostak, F. Royo, A. Rybarczyk, M. Szachniuk, J. Blazewicz, A. del Sol, J.M. Falcon-Perez (2014). Sorting signal targeting mRNA into hepatic extracellular vesicles. RNA Biology 11(7), 2014, 836-844 (doi:10.4161/rna.29305).
  4. D. Santoni, A. Świercz, A. Żmienko, M. Kasprzak, M. Błażewicz, P. Bertolazzi, G. Felici (2014). An integrated approach (CLuster Analysis Integration Method) to combine expression data and protein-protein interaction networks in agrigenomics: Application on Arabidopsis thaliana. OMICS: A Journal of Integrative Biology 2, pp.155-165.
  5. M. Antczak, T. Zok, M. Popenda, P. Lukasiak, R.W. Adamiak, J. Blazewicz, M. Szachniuk (2014). RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs. Nucleic Acids Research 2014, W368-W372. (doi:10.1093/nar/gku330)
  6. M. Szachniuk, M.C. De Cola, G. Felici, J. Blazewicz (20134). The Orderly Colored Longest Path Problem - a survey of applications and new algorithms. RAIRO Operations Research 48(1), pp. 25-51 (doi:10.1051/ro/2013046).
  7. S. Wasik, P. Jackowiak, M. Figlerowicz, J. Blazewicz (2014). Multi-agent model of hepatitis c virus infection.
    Artificial intelligence in medicine 60, pp.123-131.
  8. P. Wojciechowski, P. Formanowicz, J Blazewicz (2014). Reference alignment based methods for quality evaluation of multiple sequence alignment - a survey. Current Bioinformatics 9, pp. 44-56.
  9. A. Swiercz, B. Bosak, M. Chłopkowski, A. Hoffa, M. Kasprzak, K. Kurowski, T. Piontek, J. Błazewicz (2014). Preprocessing and storing high-throughput sequencing data. Computational Methods in Science and Technology 20, pp. 9-20.
  10. G-W. Weber, J. Blazewicz, M. Rauner, M. Türkay (2014). Recent advances in computational biology, bioinformatics, medicine, and healthcare by modern OR. CEJOR 22, pp. 427-430.
  11. A. Swiercz, E.K. Burke, M. Cicheński, G. Pawlak, S. Petrovic, T. Zurkowski, J. Blazewicz (2014). Unified encoding for hyper-heuristics with application to bioinformatics. CEJOR 22, pp.567-589.