Eur_gold_medal_awers

Get familiar with our publications, read about our national and international projects, take a look at the awards collection!

ACHIEVEMENTS
ACHIEVEMENTS
We are proud of...
2003


  1. J. Blazewicz, M. Kasprzak (2003). Determining genome sequences from experimental data using evolutionary computation. Chapter 3 in Evolutionary Computation in Bioinformatics, G.B. Fogel, D.W. Corne (eds.), San Francisco: Morgan Kaufmann Publishers.
  2. J. Blazewicz, B. Dziurdza, W. T. Markiewicz (2003). Artificial evolution. An algorithm for an exploration of the amino acid sequences spaces. Foundations of Computing and Decision Sciences 28, pp. 195-209.
  3. M. Szachniuk, R.W. Adamiak, P. Formanowicz, Z. Gdaniec, M. Kasprzak, M. Popenda, J. Blazewicz (2003). A combinatorial analysis of 2D NMR spectra of RNA duplexes. Currents in Computational Molecular Biology, Rainer Spang, Patricia Beziat, Martin Vingron (eds.), pp. 345-346.
  4. J. Blazewicz, M. Jaroszewski (2003). New algorithm for the Simplified Partial Digest Problem. Lecture Notes in Bioinformatics 2812, pp. 95-110.
  5. J. Blazewicz, P. Formanowicz, R. Urbaniak (2003). DNA based algorithms for some scheduling problems. Lecture Notes in Computer Science 2611, pp. 673-683.
  6. J. Blazewicz, M. Kasprzak (2003). Complexity of DNA sequencing by hybridization. Theoretical Computer Science 290, pp. 1459-1473.
  7. J. Blazewicz, P. Formanowicz, P. Kedziora, P. Wojciechowski (2003). Parallel implementation of algorithms for evolutionary history reconstruction on SUN Fire 6800 computer. Research Report RA-004/2003. Poznan Supercomputing and Networking Center.
  8. P. Formanowicz, K. Kwarciak (2003). Zastosowanie teorii jezykow formalnych do wykrywania genow kodujacych RNA. Research Report RB-038/03. Institute of Computing Science, Poznan University of Technology.
  9. J. Blazewicz, M. Jaroszewski, M. Kasprzak, B. Paliswiat, P. Pryputniewicz (2003). On the complexity of the double digest problem. Research Report 74. Laboratoire Leibniz-IMAG, Grenoble.
  10. J. Blazewicz, P. Formanowicz, M. Kasprzak, W.T. Markiewicz, A. Swiercz (2003). Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries. Research report 11. Mathematical Biosciences Institute, Ohio State University.

2002


  1. P. Formanowicz (2002). On Some Problems of Computational Biology. Pro Dialog 14, pp. 1-14.
  2. J. Blazewicz, P. Formanowicz, M. Kasprzak, P. Schuurman, G. Woeginger (2002). DNA sequencing, Eulerian graphs, and the exact perfect matching problem. Lecture Notes in Computer Science 2573, pp. 13-24.
  3. J. Blazewicz, P. Formanowicz, F. Guinand, M. Kasprzak (2002). A heuristic managing errors for DNA sequencing. Bioinformatics 18, pp. 652-660.
  4. J. Blazewicz, M. Kasprzak, W. Kuroczycki (2002). Hybrid genetic algorithm for DNA sequencing with errors. Journal of Heuristics 8, pp. 495-502.
  5. M. Kasprzak (2002). Bioportal. Algorytmy asemblacji lancuchow DNA.Research report RA-003/2002. Poznan Supercomputing and Networking Center.

2001


  1. J. Blazewicz, P. Hammer, P. Lukasiak (2001). Protein secondary structure prediction using Logical Analysis of Data. Proc. Mathematics and Computers in Science and Engineering, ESES Press, pp. 202-206.
  2. J. Blazewicz, P. Formanowicz, M. Kasprzak, K. Michalak, P. Wierzejewski (2001). Clustal W algorithm for multiple sequence alignment revisited. Foundations of Computing and Decision Sciences 26, pp. 189-196.
  3. J. Blazewicz, P. Formanowicz, M. Jaroszewski, M. Kasprzak, W.T. Markiewicz (2001). Construction of DNA restriction maps based on a simplified experiment. Bioinformatics 17, pp. 398-404.
  4. J. Blazewicz, M. Ratajczyk (2001). Drzewa filogenetyczne - informatyczne problemy badawcze. ProDialog 12, pp. 1-32.
  5. J. Blazewicz, P. Hammer, P. Lukasiak (2001). Prediction of protein secondary structure using Logical Analysis of Data algorithm. Computational Methods in Science and Technology 7, pp. 7-25.

2000


  1. J. Blazewicz, P. Formanowicz, M. Kasprzak, P. Wierzejewski (2000). Web server for computational biology problems. Proc. ISThmus'2000, Poznan, pp. 77-85.
  2. J. Blazewicz, P. Formanowicz, M. Kasprzak, W.T. Markiewicz, J. Weglarz (2000). Tabu search for DNA sequencing with false negatives and false positivies. European Journal of Operational Research 125, pp. 257-265.
  3. J. Blazewicz, P. Formanowicz, M. Kasprzak, W.T. Markiewicz (2000). Sequencing by hybridization with isothermic oligonucleotide libraries. Research report RA-002/2000. Poznan Supercomputing and Networking Center.
  4. J. Blazewicz, P. Formanowicz, M. Kasprzak, P. Wierzejewski (2000). Serwer WWW udostepniajacy w Internecie uslugi konstrukcji drzew filogenetycznych oraz dopasowania sekwencji aminokwasowych URL:http://cbs.cs.put.poznan.pl/. Research report RA-005/2000. Poznan Supercomputing and Networking Center.

1999


  1. J. Blazewicz, P. Formanowicz, M. Kasprzak, J. Weglarz (1999). Informatyka a biologia obliczeniowa. Pro Dialog 8, pp. 11-26.
  2. J. Blazewicz, P. Formanowicz, F.S. Glover, M. Kasprzak, J. Weglarz (1999). An improved tabu search algorithm for DNA sequencing with errors. Proc. III Metaheuristic International Conference MIC'99, Angra dos Reis, Brazil, pp. 69-75.
  3. J. Blazewicz, A. Hertz, D. Kobler, D.de Werra (1999). On some properties of DNA graphs. Discrete Applied Mathematics 98, pp. 1-19.
  4. J. Blazewicz, P. Formanowicz, M. Kasprzak, W.T. Markiewicz, J. Węglarz (1999). DNA sequencing with positive and negative errors. Journal of Computational Biology 6, pp. 113-123.
  5. R.W. Adamiak, J. Blazewicz, P. Formanowicz, M. Kasprzak, I. Krol, M. Popenda (1999)Analiza przestrzennej struktury RNA z wykorzystaniem algorytmów kombinatorycznych. Research report RA-2/99. Poznan Supercomputing and Networking Center.
  6. J. Blazewicz, P. Formanowicz, M. Jaroszewski, M. Kasprzak, W.T. Markiewicz (1999). Algorytmy konstruujące mapy restrykcyjne DNA. Research report RA-004/99. Poznan Supercomputing and Networking Center.
  7. J. Blazewicz, P. Formanowicz, M. Kasprzak, W. Kuroczycki (1999). Algorytmy heurystyczne dla zagadnień sekwencjonowania z błędami. Research report RA-003/99. Poznan Supercomputing and Networking Center.

1997


  1. J. Blazewicz, A. Cysewska-Sobusiak, A. Lerczak, M. Kasprzak, W.T. Markiewicz (1997). Parameter analysis of clusters of melting temperatures of DNA chains. Computational Methods in Science and Technology3, pp. 7-13.
  2. J. Blazewicz, M. Kasprzak, M.Sterna, J. Weglarz (1997). On some combinatorial optimization models for molecular biology. Proc. EURO XV, Barcelona, pp. 81-103.
  3. J. Blazewicz, P. Formanowicz, M. Kasprzak, W.T. Markiewicz, J. Weglarz (1997). Sequencing by hybridization with positive fauls. Proc.International Conference Genome Informatics'97,Tokyo, pp. 35-43.
  4. J. Blazewicz, M. Kasprzak, M. Sterna, J. Weglarz (1997). Selected combinatorial optimization problemsarising in molecular biology. Ricerca Operativa 26, pp. 35-63.
  5. J. Blazewicz, J. Kaczmarek, M. Kasprzak, W.T. Markiewicz, J. Weglarz (1997). Sequential and parallel algorithms for DNA sequencing. CABIOS13, pp. 151-158.
  6. J. Blazewicz, P. Formanowicz, M. Glowczynska, M. Kasprzak (1997). Algorytmy wspomagające odczytywanie genomu wykorzystujące metaheurystyką tabu search. Research reportRA-5/97. Poznan Supercomputing and Networking Center.
  7. J. Blazewicz, P. Formanowicz, M. Kasprzak, W.T. Markiewicz, J. Weglarz (1997). DNA Sequencing with Positive and Negative Errors. Research reportRA-002/97. Poznan Supercomputing and Networking Center.

1996


  1. J. Blazewicz, L. Gwozdz, M. Kasprzak, M. Przysucha (1996). A comparison of two DNA sequencing methods. Computational Methods in Science and Technology 2, pp. 17-32.
  2. J. Blazewicz, J. Kaczmarek, M. Kasprzak, W.T. Markiewicz, J. Weglarz (1996). Sequential algorithms for DNA sequencing. Computational Methods in Science and Technology 1, pp. 31-42.