Szymon Wąsik, Award of Ministry of Science and Higher Education for academic achievements;
Weronika Krzynowek, Melania Nowicka, Katarzyna Rżosińska, Jakub Bartoszewicz, the Bronze Medal for the Mustafa software on the iGEM 2014 Competition;
Natalia Szóstak, Polish Bioinformatics Society Award for the best oral presentation during VII Convention of the Polish Bioinformatics Society.
2013
Jacek Blazewicz, Piotr Lukasiak and Marta Szachniuk, Scientific Award of the IBCh PAS Research Council for the best experimental work of the year (RNAComposer)
Marek Szewczyk, Polish Bioinformatics Society Distinction for the best master thesis in bioinformatics (title "Wysoko-przepustowa statystyczna analiza parametrów struktur białkowych", supervisor: prof. J. Błażewicz)
Piotr Formanowicz, Scientific Award of Section IV of Polish Academy of Sciences in the field of computer science
2012
Jacek Błażewicz, the IEEE Fellow nomination for contributions to combinatorial models of task scheduling. The IEEE is the world’s leading professional organization for advancing technology for humanity and up until now only 15 nominees are from Poland
Jacek Błażewicz, Copernicus Prize awarded by the Foundation for Polish Science and Deutsche Forschungsgemeinschaft for research and development of algorithms in the field of scheduling and bioinformatics
Tomasz Żok, Polish Bioinformatics Society Distinction for the best master thesis in bioinformatics (title "Molecular structure comparison in torsional angle space", supervisor: dr. Marta Szachniuk)
2011
Michał Kierzynka and Wojciech Frohmberg, Polish Bioinfotmatics Society Award for the best master thesis in bioinformatics (title "Development of sequence alignment methods on Graphics Processing Unit", supervisor: prof. Jacek Błażewicz)
Agnieszka Rybarczyk, Polish Bioinfotmatics Society Award for the best doctoral dissertation (title "Algorithmic aspects of RNA degradation process", supervisors: Jacek Błażewicz and prof. Marek Figlerowicz)
2010
Szymon Wąsik, Polish Bioinformatics Society Award for the best poster presentation (title "Modeling HCV infection using multi-agent simulation") granted PTBi Workshop 2010
Agnieszka Rybarczyk, Polish Bioinformatics Society Award for the best oral presentation (title "The exact algorithm and complexity analysis for RNA Partial Degradation Problem"), granted during PTBi Workshop 2010
Wojciech Mruczkiewicz, Polish Bioinfotmatics Society Award for the best master thesis in bioinformatics (title "Hyper-heuristics for Sequencing by Hybridization Problem", supervisor: prof. Jacek Błażewicz)
2009
Marek Błażewicz, Polish Bioinformatics Society Distinction for the best master thesis in bioinformatics (title "RNA fragment search engine - project and implementation", supervisor: dr. Marta Szachniuk)
Marta Szachniuk, Scientific award of the IBCh PAS Research Council for the best experimental work of the year (RNA FRABASE)
Marta Kasprzak, Medal of the National Education Commission
2007
Piotr Formanowicz, Prime Minister Award for habilitation thesis (title "Selected combinatorial aspects of biological sequence analysis")
